Author

Patrik Smeds

Pennsylvania State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:multiple species· 1

Frequent Co-Authors

Alice Maria GianiiD· 1 shared Anton NekrutenkoiD· 1 shared Bonhwang KooiD· 1 shared Claes LadenvalliD· 1 shared Erich David JarvisiD· 1 shared Erick DuarteiD· 1 shared Eugene Wimberly MyersiD· 1 shared Florian Reisinger· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Alice Maria GianiORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 19, 2025

Evaluation of sequencing reads at scale using rdeval

Giulio Formenti, Bonhwang Koo, Marco Sollitto…·Erich David Jarvis

The paper introduces rdeval, a tool for efficiently evaluating and visualizing sequencing read metrics, showing improvements in read quality and genome assembly with PacBio data.

4 citations

humanmultiple species

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedDec 1, 2019

Arteria: An automation system for a sequencing core facility

Johan Dahlberg, Johan Hermansson, Steinar Sturlaugsson…·Pontus Larsson

Arteria provides an automation system for sequencing core facilities using modular, open-source micro-services.

5 citations

experimental assaysoftware / tool

𝕏 PostBluesky