Author

R. A. Cheng

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Organism:bacteria (other)· 3 Approach:statistical model· 3 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

L. M. Carroll· 4 shared A. J. Buehler· 2 shared J. Kovac· 2 shared M. Wiedmann· 2 shared A. Gaballa· 1 shared A. S. Harrand· 1 shared C. Guldimann· 1 shared H. Gourle· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersMicrobiology

L. M. Carroll

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Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintDec 20, 2023

A community-curated, global atlas of Bacillus cereus sensu lato genomes for epidemiological surveillance

V. Ramnath, M. Larralde, P. Menchik…·L. M. Carroll

The paper develops BTyperDB, a global atlas of Bacillus cereus sensu lato genomes, to improve pathogen surveillance and identify emerging lineages.

DOI 10.1101/2023.12.20.572685

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivPreprintApr 6, 2022

A multidrug-resistant Salmonella enterica Typhimurium DT104 complex lineage circulating among humans and cattle in the United States lost the ability to produce pertussis-like toxin ArtAB

L. M. Carroll, N. Piacenza, R. A. Cheng…·C. Guldimann

The paper identifies a multidrug-resistant Salmonella DT104 lineage lacking the ArtAB toxin, circulating in humans and cattle in the U.S., and shows it lost these genes around 1985-1987.

DOI 10.1101/2022.04.06.487395

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivAug 20, 2021

Monitoring the Antimicrobial Resistance Dynamics of Salmonella enterica in Healthy Dairy Cattle Populations at the Individual Farm Level Using Whole-Genome Sequencing

L. M. Carroll, A. J. Buehler, A. Gaballa…·M. Wiedmann

This study uses whole-genome sequencing to analyze Salmonella strains from dairy cattle farms, revealing AMR dynamics and evaluating in silico tools for serotyping and resistance detection.

DOI 10.3389/fmicb.2021.763669

whole-genome sequencingstatistical model

𝕏 PostBluesky

MicrobiologybioRxivJun 28, 2020

No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus group with Historical Typing Methods

L. M. Carroll, R. A. Cheng, J. Kovac

The paper evaluates the congruency of a new taxonomic framework for B. cereus group with historical methods using MLST, panC, and WGS data, showing compatibility and providing tools for classification.

DOI 10.3389/fmicb.2020.580691

bacteria (other)whole-genome sequencing

𝕏 PostBluesky