Author

R. Bagchi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Cell Biology· 1 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Ligaba-Osena· 1 shared A. S. Riching· 1 shared B. Klein· 1 shared C. Chi· 1 shared E. A. Josephs· 1 shared E. Danis· 1 shared F. Roger· 1 shared H. Xu· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperBioengineering

A. Ligaba-Osena

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Understandable Multifunctionality Measures Using Hill Numbers

J. E. K. Byrnes, F. Roger, R. Bagchi

The paper introduces a new multifunctionality metric inspired by species diversity theory, accounting for function evenness and performance levels, and aims to address limitations in existing metrics.

bioRxiv · Mar 17, 2022Ecology

Polyvalent Guide RNAs for CRISPR Antivirals

R. Bagchi, R. Tinker-Kulberg, T. Supakar, S. Chamberlain, A. Ligaba-Osena, E. A. Josephs

This paper designs polyvalent guide RNAs (pgRNAs) for CRISPR antivirals that can target multiple viral sites simultaneously, showing improved suppression of plant RNA viruses compared to monovalent gRNAs.

bioRxiv · Feb 25, 2021Bioengineering

Suppression of canonical TGF-β signaling enables GATA4 to interact with H3K27me3 demethylase JMJD3 to promote cardiomyogenesis

A. S. Riching, E. Danis, Y. Zhao, Y. Cao, C. Chi, R. Bagchi, B. Klein, H. Xu, T. Kutateladze, T. McKinsey, P. Buttrick, K. Song

The paper identifies how TGF-β signaling inhibition allows GATA4 to interact with JMJD3, promoting cardiomyogenesis by demethylating H3K27me3 at cardiac gene promoters.

bioRxiv · Feb 12, 2020Cell Biology