Author

Renke Pan

Sentieon (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:machine learning (classical)· 2 Research Focus:variant calling· 2 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Donald N. FreediD· 2 shared Rafael AldanaiD· 2 shared Haodong CheniD· 1 shared Jinnan HuiD· 1 shared Zhipan LiiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Donald N. FreedORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 20, 2022

DNAscope: High accuracy small variant calling using machine learning

Donald N. Freed, Renke Pan, Haodong Chen…·Rafael Aldana

DNAscope improves small variant calling accuracy and reduces computational cost compared to DNAseq using a machine-learned genotyping model.

21 citations

whole-genome sequencingmachine learning (classical)

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 19, 2018

TNscope: Accurate Detection of Somatic Mutations with Haplotype-based Variant Candidate Detection and Machine Learning Filtering

Donald N. Freed, Renke Pan, Rafael Aldana

A haplotype-based somatic variant caller paired with a machine learning filter, reported as more accurate than other callers on in-silico mixtures of GIAB reference samples.

63 citations

whole-exome sequencingmachine learning (classical)

𝕏 PostBluesky