Author

S. Bastkowski

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Organism:chicken / avian· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

M. Yasir· 2 shared A. Buckling· 1 shared A. E. Darling· 1 shared A. K. Turner· 1 shared A. Page· 1 shared A. Telatin· 1 shared C. Koch· 1 shared D. Swarbreck· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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2 shared papersMicrobiology

M. Yasir

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Evolution of regulatory networks associated with traits under selection in cichlids

T. K. Mehta, C. Koch, W. Nash, S. A. Knaack, P. Sudhakar, M. Olbei, S. Bastkowski, L. Penso-Dolfin, T. Korcsmaros, W. Haerty, S. Roy, F. Di-Palma

The paper reconstructs gene regulatory networks in cichlids to study GRN evolution linked to adaptive traits, identifying regulatory variants and network rewiring in visual opsin genes.

bioRxiv · Apr 17, 2020Evolutionary Biology

A genome wide analysis of Escherichia coli responses to fosfomycin using TraDIS-Xpress reveals novel roles for the phosphonate and phosphate transport systems

M. Yasir, A. K. Turner, S. Bastkowski, I. G. Charles, M. A. Webber

This study uses TraDIS-Xpress to analyze E. coli's genome-wide response to fosfomycin, identifying novel genes and transport systems involved in sensitivity.

bioRxiv · Dec 23, 2019Microbiology

A new massively-parallel transposon mutagenesis approach comparing multiple datasets identifies novel mechanisms of action and resistance to triclosan

M. Yasir, K. Turner, s. bastkowski, A. Page, A. Telatin, M.-D. Phan, L. Monahan, A. E. Darling, M. Webber, I. Charles

This paper introduces a new TraDIS approach with AlbaTraDIS tool to analyze triclosan resistance mechanisms across multiple concentrations, identifying novel genes involved in bacterial survival.

bioRxiv · Apr 4, 2019Microbiology

Predicting the structure and function of coalesced microbial communities

P. Sierocinski, K. Milferstedt, F. Bayer, T. Grosskopf, M. Alston, S. Bastkowski, D. Swarbreck, P. J. Hobbs, O. S. Soyer, J. Hamelin, A. Buckling

The paper shows that mixing methanogenic communities leads to increased methane production, driven by dominant, resource-efficient communities rather than average species performance.

bioRxiv · Jan 27, 2017Microbiology