Author

S. A. Knaack

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 4 Research Focus:cell type annotation· 3 Research Focus:chromatin & epigenetic regulation· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2

Frequent Co-Authors

S. Roy· 5 shared C. Dervinis· 4 shared D. Conde· 4 shared H. W. Schmidt· 4 shared K. M. Balmant· 4 shared M. Kirst· 4 shared P. M. Triozzi· 4 shared W. J. Pereira· 4 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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5 shared papersPlant Biology

S. Roy

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Author profile →

5 papers

Recent·Most cited

The Single-Cell Transcriptome Program of Nodule Development Cellular Lineages in Medicago truncatula

W. J. Pereira, J. Boyd, D. Conde, P. M. Triozzi, K. M. Balmant, C. Dervinis, H. W. Schmidt, C. Boaventura-Novaes, S. Chakraborty, S. A. Knaack, Y. Gao, F. A. Feltus, S. Roy, J.-M. Ane, J. Frugoli, M. Kirst

The paper characterizes single-cell transcriptomes during Medicago truncatula nodule development, revealing dynamic changes in auxin and cytokinin signaling pathways across cell lineages.

bioRxiv · Jun 13, 2023 · PreprintPlant Biology

Single-cell analysis resolves the genetic program of primary vascular system formation in hybrid poplar

D. Conde, P. M. Triozzi, W. J. Pereira, H. W. Schmidt, K. M. Balmant, S. A. Knaack, S. Roy, C. Dervinis, M. Kirst

The paper uses single-cell RNA-seq to map the genetic program of primary vascular development in hybrid poplar at single-cell resolution.

bioRxiv · Dec 28, 2021 · PreprintPlant Biology

Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula

S. A. Knaack, D. Conde, S. Chakraborty, K. M. Balmant, T. B. Irving, L. Gontijo Silva Maia, P. M. Triozzi, C. Dervinis, W. J. Pereira, J. Maeda, H. W. Schmidt, J.-M. Ane, M. Kirst, S. Roy

The paper identifies regulators of legume-rhizobia symbiosis by analyzing temporal chromatin accessibility and gene expression in Medicago truncatula roots.

bioRxiv · Aug 7, 2021Plant Biology

Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade

W. J. Pereira, S. A. Knaack, D. Conde, S. Chakraborty, R. A. Folk, P. M. Triozzi, K. M. Balmant, C. Dervinis, H. W. Schmidt, J.-M. Ane, S. Roy, M. Kirst

The paper identifies conserved noncoding sequences in nitrogen-fixing plants and shows their role in regulating genes involved in root nodule symbiosis.

bioRxiv · Jul 27, 2021Plant Biology

Evolution of regulatory networks associated with traits under selection in cichlids

T. K. Mehta, C. Koch, W. Nash, S. A. Knaack, P. Sudhakar, M. Olbei, S. Bastkowski, L. Penso-Dolfin, T. Korcsmaros, W. Haerty, S. Roy, F. Di-Palma

The paper reconstructs gene regulatory networks in cichlids to study GRN evolution linked to adaptive traits, identifying regulatory variants and network rewiring in visual opsin genes.

bioRxiv · Apr 17, 2020Evolutionary Biology