Author

S. J. Hoosdally

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:drug response / drug discovery· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1

Frequent Co-Authors

D. W. Crook· 4 shared A. L. Gibertoni Cruz· 2 shared A. S. Walker· 2 shared A. T. M. Hubbard· 2 shared D. M. Cirillo· 2 shared D. S. Read· 2 shared E. Borroni· 2 shared H. S. Gweon· 2 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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4 shared papersMicrobiology

D. W. Crook

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4 papers

Recent·Most cited

MicrobiologyScience AdvancesPeer-reviewedApr 9, 2021

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

L. P. Shaw, K. K. Chau, J. Kavanagh…·REHAB consortium

The paper analyzes the pangenome dynamics of Enterobacteriaceae from environmental sources, finding that plasmids carry more AMR genes and are influenced by niche and geography rather than phylogeny.

DOI 10.1126/sciadv.abe3868

bacteria (other)metagenomics

𝕏 PostBluesky

MicrobiologybioRxivMar 31, 2019

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

H. S. Gweon, L. P. Shaw, J. Swann…·The REHAB consortium

This study evaluates how sequencing depth affects taxonomic composition and AMR gene detection in metagenomic samples, finding that higher depth is needed for AMR gene richness.

DOI 10.1186/s40793-019-0347-1

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivJun 15, 2018

Validating a 14-drug microtitre plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis

P. M. Rancoita, F. Cugnata, A. L. Gibertoni Cruz…·the CRyPTIC Consortium

The paper validates a 14-drug microtitre plate for measuring MICs of anti-TB compounds in M. tuberculosis isolates, finding optimal reading with the Vizion system after 14 days incubation.

DOI 10.1128/aac.00344-18

humanwhole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivJun 15, 2018

Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis

P. W. Fowler, A. L. Gibertoni Cruz, S. J. Hoosdally…·D. W. Crook

This paper introduces AMyGDA, a software tool for automated detection of M. tuberculosis growth on 96-well plates to determine drug susceptibility.

DOI 10.1099/mic.0.000733

humanmouse

𝕏 PostBluesky