Author

S. Nayfach

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Organism:bacteria (other)· 2 Approach:machine learning (classical)· 2 Organism:virus· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

S. Roux· 2 shared A. Almeida· 1 shared A. Hoarfrost· 1 shared A. L. Borges· 1 shared A. P. Camargo· 1 shared A. Tritt· 1 shared A. Visel· 1 shared B. E. Dutilh· 1 shared

Activity by Year

2019-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersMicrobiology

S. Roux

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes

S. Roux, A. P. Camargo, F. H. Coutinho, S. M. Dabdoub, B. E. Dutilh, S. Nayfach, A. Tritt

iPHoP integrates multiple methods to predict viral hosts from metagenome-derived genomes with low false discovery rate.

bioRxiv · Jul 28, 2022Microbiology

A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome

A. Almeida, S. Nayfach, M. Boland, F. Strozzi, M. Beracochea, Z. J. Shi, K. S. Pollard, D. H. Parks, P. Hugenholtz, N. Segata, N. C. Kyrpides, R. D. Finn

The paper presents a comprehensive genomic resource of over 280,000 human gut microbiome genomes and their protein sequences, highlighting gaps in functional annotations and genomic diversity.

bioRxiv · Sep 19, 2019Microbiology

Global ecotypes in the ubiquitous marine clade SAR86

A. Hoarfrost, S. Nayfach, J. Ladau, S. Yooseph, C. Arnosti, C. L. Dupont, K. Pollard

The paper identifies five SAR86 gene clusters with distinct geographic distributions and environmental associations, revealing complex biogeography and functional specialization.

bioRxiv · May 10, 2019Ecology

Cryptic inoviruses are pervasive in bacteria and archaea across Earth's biomes

S. Roux, M. Krupovic, R. A. Daly, A. L. Borges, S. Nayfach, F. Schulz, J.-F. Cheng, N. N. Ivanova, J. Bondy-Denomy, K. C. Wrighton, T. Woyke, A. Visel, N. Kyrpides, E. A. Eloe-Fadrosh

The paper identifies 10,295 inovirus-like genomes across diverse ecosystems, revealing their widespread presence and complex interactions with bacterial and archaeal hosts.

bioRxiv · Feb 15, 2019Microbiology

S. Nayfach · henhao