Author

S. Simmons

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Immunology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Assay:imaging· 3 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Organism:mouse· 2 Assay:behavioral assay· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

A. Audzijonyte· 2 shared J. Dainys· 2 shared A. Abdelgawad· 1 shared A. D. Gruber· 1 shared A. Langenhagen· 1 shared A. Voss· 1 shared A. Zarfeshani· 1 shared B. Diamond· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersEcology

A. Audzijonyte

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Lupus autoantibodies initiate a maladaptive equilibrium sustained by HMGB1:RAGE signaling and reversed by LAIR-1:C1q signaling

K. Carroll, M. Mizrachi, S. Simmons, B. Toz, J. Wingard, N. Tehrani, A. Zarfeshani, N. Kello, C. Kowal, J. Z. Levin, B. Volpe, B. Diamond

The paper models lupus-like cognitive impairment initiated by autoantibodies, showing HMGB1:RAGE signaling sustains maladaptive hippocampal injury, which is reversed by LAIR-1:C1q signaling.

bioRxiv · May 1, 2023 · PreprintImmunology

A machine learning based image classification method to estimate fish sizes from images without a specified reference object

C. Nunes Soares Silva, J. Dainys, S. Simmons, A. Audzijonyte

The paper presents a machine learning method to estimate fish size classes from photos of anglers holding fish, achieving ~50% accuracy with limited data.

bioRxiv · Dec 27, 2022 · PreprintEcology

A scalable open-source framework for machine learning based image collection, annotation and classification: a case study for automatic fish species identification

C. N. S. Silva, J. Dainys, S. Simmons, V. Vienozinskis, A. Audzijonyte

bioRxiv · Jun 29, 2022Ecology

A live attenuated vaccine confers superior mucosal and systemic immunity to SARS-CoV-2 variants

G. Nouailles, J. M. Adler, P. Pennitz, S. Peidli, G. Teixeira Alves, M. Baumgart, J. Bushe, A. Voss, A. Langenhagen, F. Pott, J. Kazmierski, C. Goekeri, S. Simmons, N. Xing, C. Langner, , J. Trimpert

This study compares immune responses and efficacy of different SARS-CoV-2 vaccines in hamsters, finding that a live-attenuated vaccine provides superior protection against variants.

bioRxiv · May 16, 2022Immunology

Spatiotemporal dynamics of RNA virus diversity in a phyllosphere microbial community

L. M. Bono, R. J. Orton, E. L. Peredo, H. G. Morrison, M. J. Sistrom, S. Simmons, P. Turner

The paper examines spatiotemporal dynamics of RNA virus diversity in white clover patches, finding consistent dominance of Alphaflexiviridae and WClMV across space and time.

bioRxiv · Sep 18, 2019 · PreprintMicrobiology