Author

S. Wagle

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Organism:virus· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:imaging· 1 Assay:metagenomics· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

A. Markin· 2 shared O. Eulenstein· 2 shared T. K. Anderson· 2 shared A. L. Vincent Baker· 1 shared B. B. Neupane· 1 shared B. Giri· 1 shared R. Duwal· 1 shared R. Shrestha· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersEvolutionary Biology

A. Markin

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Author profile →

3 papers

Recent·Most cited

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny

A. Markin, S. Wagle, S. Grover, A. L. Vincent Baker, O. Eulenstein, T. K. Anderson

PARNAS selects representative taxa from large phylogenies to cover diversity efficiently, applied to influenza A virus data to inform vaccine design.

bioRxiv · Sep 12, 2022Evolutionary Biology

RF-Net 2: Fast Inference of Virus Reassortment and Hybridization Networks

A. Markin, S. Wagle, T. K. Anderson, O. Eulenstein

RF-Net 2 improves virus reassortment and hybridization network inference by handling more reticulations and providing error correction, validated on influenza A virus data.

bioRxiv · May 5, 2021Evolutionary Biology

A smartphone microscope method for simultaneous detection of (oo)cyst of Cryptosporodium and Giardia

R. Shrestha, R. Duwal, S. Wagle, S. Pokhrel, B. Giri, B. B. Neupane

This paper develops a smartphone-based microscope method to detect Cryptosporodium and Giardia (oo)cysts in vegetables and water, achieving comparable recovery rates to commercial microscopes.

bioRxiv · Apr 9, 2020 · PreprintPathology