Author

S. Pokhrel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6 Cell Biology· 1 Immunology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Organism:plant (other)· 5 Assay:bulk RNA-seq· 3 Research Focus:chromatin & epigenetic regulation· 3 Research Focus:differential expression· 3 Research Focus:cell type annotation· 2 Assay:DNA methylation· 2 Research Focus:host-pathogen & immune response· 2

Frequent Co-Authors

B. C. Meyers· 6 shared S. Belanger· 3 shared A. Baten· 1 shared A. Dusia· 1 shared A. Elezaby· 1 shared A. G. Freud· 1 shared A. J. Lin· 1 shared A. Saadey· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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6 shared papersPlant Biology

B. C. Meyers

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Author profile →

9 papers

Recent·Most cited

Cardiac Troponin I Directly Binds and Inhibits Mitochondrial ATP Synthase: a Noncanonical Role in the Post-Ischemic Heart

A. Elezaby, A. J. Lin, V. Vijayan, S. Pokhrel, L. R. Bechara, N. P. Ostberg, B. B. Queliconi, J. C. Campos, J. C. Ferreira, B. Haileselassie, D. Mochly-Rosen

This study identifies a noncanonical role of cardiac troponin I in inhibiting mitochondrial ATP synthase, showing that blocking this interaction reduces cardiac injury during ischemia.

bioRxiv · Feb 3, 2023Cell Biology

Aiolos modulates the TFH and CD4-CTL differentiation programs via reciprocal regulation of the Zfp831/TCF-1/Bcl-6 axis and CD25

K. A. Read, D. M. Jones, S. Pokhrel, E. D. S. Hales, A. Varkey, J. A. Tuazon, C. D. Eisele, O. Abdouni, A. Saadey, R. T. Warren, M. D. Powell, J. M. Boss, E. A. Hemann, J. S. Yount, H. E. Ghoneim, , K. J. Oestreich

This study identifies Aiolos as a regulator of TFH and CD4-CTL differentiation, showing it modulates the Zfp831/TCF-1/Bcl-6 axis and suppresses the cytotoxic gene program.

bioRxiv · May 18, 2022 · PreprintImmunology

Characterization of Heat Responsive microRNAs and Phased Small Interfering RNAs in Reproductive Development of Flax

S. Pokhrel, B. C. Meyers

The paper identifies heat-responsive miRNAs and phasiRNAs in flax reproductive development, revealing novel regulatory elements and their differential expression under heat stress.

bioRxiv · Oct 2, 2021 · PreprintPlant Biology

The Evolutionary History of Small RNAs in the Solanaceae

P. Baldrich, S. Belanger, S. Kong, S. Pokhrel, S. Tamim, C. Teng, C. Schiebout, S. G. R. Gurazada, P. Gupta, P. Patel, H. Razifard, M. Nakano, A. Dusia, B. C. Meyers, M. Frank

The paper uses over 255 small RNA datasets to characterize the small RNA landscape across the Solanaceae family, revealing dynamic evolutionary patterns and genus-specific similarities.

bioRxiv · May 26, 2021Plant Biology

Conserved and non-conserved triggers of 24-nt reproductive phasiRNAs in eudicots

S. Pokhrel, K. C. Huang, B. C. Meyers

The paper identifies conserved and non-conserved triggers of 24-nt phasiRNAs in eudicots, including new triggers and expanded loci in wild strawberry and validated pathways in rose.

bioRxiv · Jan 20, 2021Plant Biology

Pre-meiotic, 21-nucleotide Reproductive PhasiRNAs Emerged in Seed Plants and Diversified in Flowering Plants

S. Pokhrel, K. Huang, S. Belanger, J. L. Caplan, E. M. Kramer, B. C. Meyers

The paper identifies 21-nt reproductive phasiRNAs in eudicots, showing their emergence in seed plants and loss in some lineages.

bioRxiv · Oct 16, 2020Plant Biology

Pre-meiotic, 24-nt reproductive phasiRNAs are abundant in anthers of wheat and barley but not rice and maize

S. Belanger, S. Pokhrel, K. J. Czymmek, B. C. Meyers

This study identifies 24-nt reproductive phasiRNAs in pre-meiotic and meiotic stages of wheat and barley anthers, absent in maize and rice.

bioRxiv · Jun 18, 2020Plant Biology

A smartphone microscope method for simultaneous detection of (oo)cyst of Cryptosporodium and Giardia

R. Shrestha, R. Duwal, S. Wagle, S. Pokhrel, B. Giri, B. B. Neupane

This paper develops a smartphone-based microscope method to detect Cryptosporodium and Giardia (oo)cysts in vegetables and water, achieving comparable recovery rates to commercial microscopes.

bioRxiv · Apr 9, 2020 · PreprintPathology

Abundant expression of maternal siRNAs is a conserved feature of seed development

J. W. Grover, D. G. Burgess, T. Kendall, A. Baten, S. Pokhrel, G. J. King, B. C. Meyers, M. Freeling, R. A. Mosher

The paper shows that maternal siRNAs are abundant and conserved in seed development across angiosperms, with a maternal bias in endosperm and dependence on RNA Pol IV/RDR2.

bioRxiv · Dec 6, 2019Plant Biology