Author

A. Markin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:host-pathogen & immune response· 4 Approach:deep learning· 3 Approach:statistical model· 3 Organism:virus· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Organism:chicken / avian· 1

Frequent Co-Authors

T. K. Anderson· 6 shared O. Eulenstein· 3 shared S. Wagle· 3 shared A. L. Baker· 2 shared A. L. Vincent Baker· 2 shared C. Hutter· 2 shared D. R. Magstadt· 2 shared G. Ciacci Zanella· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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6 shared papersMicrobiology

T. K. Anderson

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Experimental reproduction of viral replication and disease in dairy calves and lactating cows inoculated with highly pathogenic avian influenza H5N1 clade 2.3.4.4b

A. L. Baker, B. Arruda, M. V. Palmer, P. Boggiatto, K. Sarlo Davila, A. Buckley, G. Ciacci Zanella, C. A. Snyder, T. K. Anderson, C. Hutter, T.-Q. Nguyen, A. Markin, K. Lantz, E. A. Posey, M. K. Torchetti, , P. J. Gorden

This study experimentally reproduces HPAI H5N1 infection in dairy calves and cows, confirming clinical disease and viral transmission through respiratory and mammary routes.

bioRxiv · Jul 12, 2024 · PreprintMicrobiology

Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattle

T.-Q. Nguyen, C. Hutter, A. Markin, M. N. Thomas, K. Lantz, M. L. Killian, G. M. Janzen, S. Vijendran, S. Wagle, B. Inderski, D. R. Magstadt, G. Li, D. G. Diel, E. A. Frye, K. M. Dimitrov, , T. K. Anderson

This study identifies a reassortment event in wild birds leading to HPAI A(H5N1) infection in cattle and highlights the risk of virus spread through asymptomatic cattle to humans.

bioRxiv · May 1, 2024 · PreprintMicrobiology

Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential

A. Markin, G. Ciacci Zanella, Z. W. Arendsee, J. Zhang, K. M. Krueger, P. C. Gauger, A. L. Vincent Baker, T. K. Anderson

This study shows that pdm09 H1N1 influenza viruses from humans can persist in swine, evolve, and transmit back to humans, increasing pandemic risk.

bioRxiv · Dec 15, 2022 · PreprintMicrobiology

PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny

A. Markin, S. Wagle, S. Grover, A. L. Vincent Baker, O. Eulenstein, T. K. Anderson

PARNAS selects representative taxa from large phylogenies to cover diversity efficiently, applied to influenza A virus data to inform vaccine design.

bioRxiv · Sep 12, 2022Evolutionary Biology

RF-Net 2: Fast Inference of Virus Reassortment and Hybridization Networks

A. Markin, S. Wagle, T. K. Anderson, O. Eulenstein

RF-Net 2 improves virus reassortment and hybridization network inference by handling more reticulations and providing error correction, validated on influenza A virus data.

bioRxiv · May 5, 2021Evolutionary Biology

Robinson-Foulds Reticulation Networks

A. Markin, T. K. Anderson, V. S. Vadali, O. Eulenstein

This paper introduces RF-Net, a method to reconstruct reticulation networks from error-prone input trees, demonstrating its ability to identify reassortment in influenza A viruses.

bioRxiv · May 20, 2019 · PreprintEvolutionary Biology