Author

Samuel J. Choi

Whitehead Institute for Biomedical Research

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Cell Biology· 1

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexa Mallar· 1 shared Ana Karla Cepeda DiaziD· 1 shared Andrew Nutter-Upham· 1 shared Iain M. CheesemaniD· 1 shared Matteo Di BernardoiD· 1 shared Paul C. BlaineyiD· 1 shared Roshan KerniD· 1 shared Sebastian LouridoiD· 1 shared

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2026-2026 · peak 1/yr

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1 shared paperCell Biology

Alexa Mallar

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1 paper

Recent·Most cited

Cell BiologyNature CommunicationsPeer-reviewedMay 30, 2026

Brieflow: An Integrated Computational Pipeline for High-Throughput Analysis of Optical Pooled Screening Data

Matteo Di Bernardo, Roshan Kern, Ana Karla Cepeda Diaz…·Iain M. Cheeseman

Brieflow is a computational pipeline for analyzing optical pooled screening data, demonstrating its ability to recover biological modules missed by existing methods.

1 citation

proteomicsimaging

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