Author

Sarah K. Denny

Primary ORCID profile (0000-0001-8753-6040 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Sarah K. DennyiD1 paper

Biology Disciplines

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1 Assay:structural biology· 1

Frequent Co-Authors

Daniel Herschlag· 2 shared Rhiju DasiD· 2 shared William J. Greenleaf· 2 shared Inga JarmoskaiteiD· 1 shared Joseph D. Yesselman· 1 shared Kalli KappeliD· 1 shared Namita Bisaria· 1 shared Pavanapuresan P. Vaidyanathan· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 28 mutual co-author links

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2 shared papersBiophysics

Daniel Herschlag

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintMar 8, 2019

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

Winston R. Becker, Inga Jarmoskaite, Kalli Kappel…·Daniel Herschlag

The paper quantitatively tests RNA secondary structure prediction algorithms using RNA-MaP, revealing significant deviations between predictions and experimental stabilities.

DOI 10.1101/571588

bulk RNA-seqexperimental assay

𝕏 PostBluesky

BiophysicsbioRxivPreprintJun 6, 2018

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

Joseph D. Yesselman, Sarah K. Denny, Namita Bisaria…·Rhiju Das

The paper predicts RNA tertiary structure energetics using an updated helix ensemble model, showing accurate thermodynamic predictions for tertiary assemblies.

DOI 10.1101/341107

structural biologydeep learning

𝕏 PostBluesky