Author

Sepehr Ashrafzadeh

Western University

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Bioinformatics· 1

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Approach:deep learning· 1 Assay:protein sequence· 1

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Geoffrey Brian GoldingiD· 1 shared Lucian IlieiD· 1 shared Silvana Ilie AiD· 1 shared

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1 paper

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BioinformaticsBriefings in BioinformaticsPeer-reviewedMar 27, 2024

Scoring alignments by embedding vector similarity

Sepehr Ashrafzadeh, Geoffrey Brian Golding, Silvana Ilie A, Lucian Ilie

The paper introduces a new amino acid similarity scoring method, E-score, based on contextual embeddings from deep learning, showing improved alignment quality compared to BLOSUM matrices.

8 citations

protein sequencedeep learning

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