Author

Shaoqi Bei

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:large language model· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Bixia TangiD· 2 shared Demian KongiD· 2 shared Wenming ZhaoiD· 2 shared Yueyue Wu· 2 shared Huangxia Hu· 1 shared Shuying LiuiD· 1 shared Sicheng WuiD· 1 shared Xiaojing GaoiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Bixia TangORCID

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2 papers

Recent·Most cited

BioinformaticsBriefings in BioinformaticsPeer-reviewedSep 1, 2026

OmniExtract: An automatic data extraction tool based on Large Language Model and Prompt Engineering

Yibo Wang, Bixia Tang, Sicheng Wu…·Wenming Zhao

OmniExtract is a data extraction tool using LLM and prompt engineering that achieves high accuracy in extracting structured information from text and tables.

DOI 10.1093/bib/bbag502

large language modelbenchmarking

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 20, 2026

Dingent: An Easily Deployable Database Retrieval and Integration Agent framework

Demian Kong, Shaoqi Bei, Yueyue Wu…·Wenming Zhao

Dingent is a configurable agent framework that enables data retrieval from various sources using natural language and provides a web interface, demonstrated across three application scenarios.

DOI 10.64898/2026.03.17.712026

database / resourcebenchmarking

𝕏 PostBluesky