Author

Sirisha Thippabhotla

University of Kansas

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ben LiuiD· 2 shared Cuncong ZhongiD· 2 shared Jun ZhangiD· 2 shared Adam Podgorny· 1 shared Shibu YoosephiD· 1 shared Youngik YangiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Ben LiuORCID

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2 papers

Recent·Most cited

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJan 10, 2023

Integrated de novo Gene Prediction and Peptide Assembly of Metagenomic Sequencing Data

Sirisha Thippabhotla, Ben Liu, Adam Podgorny…·Cuncong Zhong

This paper introduces iMPP, a workflow for integrated de novo gene prediction and peptide assembly in metagenomics, achieving high recall and precision in gene calling and peptide recovery.

DOI 10.1093/nargab/lqad023

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsFrontiers in GeneticsPeer-reviewedMay 5, 2021

Metagenomic Noncoding RNA Profiling and Biomarker Discovery

Ben Liu, Sirisha Thippabhotla, Jun Zhang, Cuncong Zhong

This paper introduces DRAGoM, a noncoding RNA homology search algorithm for metagenomics, showing its ability to identify ncRNA biomarkers in Type-2 diabetes gut microbiome data.

2 citations

metagenomicsstatistical model

𝕏 PostBluesky