Author

Steve R. Quake

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:multiple species· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Aaron Scott· 1 shared Alan AshworthiD· 1 shared Anna BergamaschiiD· 1 shared Chin‐Jen Ku· 1 shared Chris Ellison· 1 shared Erin McCarthyiD· 1 shared François ColliniD· 1 shared Gita MahmoudabadiiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenetic & Genomic Medicine

Aaron Scott

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2 papers

Recent·Most cited

Cell BiologybioRxivPreprintMar 18, 2026

Species-specific small models for cell type classification approach the performance of large single cell foundation models

Gita Mahmoudabadi, Lakshmi Krishnan, Tejaswini Ganapathi…·Theofanis Karaletsos

The paper introduces CytoType and ESM-CE, species-specific small models for cell type classification that achieve performance comparable to large foundation models with fewer parameters.

DOI 10.64898/2026.03.16.711196

humanmultiple species

𝕏 PostBluesky

Genetic & Genomic MedicinemedRxivPreprintJan 22, 2020

Pilot study demonstrating changes in DNA hydroxymethylation enable detection of multiple cancers in plasma cell-free DNA

Anna Bergamaschi, Yuhong Ning, Chin‐Jen Ku…·Samuel Levy

This study uses 5-hydroxymethyl cytosine (5hmC) profiles in plasma cell-free DNA to detect multiple cancers with high accuracy using machine learning.

5 citations

humanDNA methylation

𝕏 PostBluesky