W. A. Freyman

This paper compares five Bayesian methods for inferring diversification rate shifts on empirical phylogenies and finds they produce different results due to model differences.

This paper introduces a Bayesian method to assess the adequacy of trait-dependent diversification models by generating posterior predictive distributions for test statistics.

RevGadgets provides an R package for creating publication-quality figures from Bayesian phylogenetic analyses in RevBayes and other software.

Homologizer phases gene copies into subgenomes using a Bayesian phylogenetic approach, demonstrating robustness to evolutionary factors and utility on real data from ferns.

The paper examines how ploidy and breeding system influence diversification rates in Solanaceae, finding that ploidy's effect is largely explained by its correlation with breeding system.

This paper introduces a Bayesian method to estimate branch-specific diversification rates in phylogenies, accounting for extinct lineages and showing increased diversification rates in Old World Monkeys.

This study dates the Hawaiian silversword clade and tests biogeographic hypotheses using a Bayesian phylogenetic framework, finding evidence for old-to-young dispersal directionality and against speciation on young islands.

This paper introduces ChromoSSE, a Bayesian model that incorporates both anagenetic and cladogenetic chromosome number evolution, and applies it to study chromosomal changes in several plant clades.