MicrobiologybioRxivPreprint
DNA metabarcoding workflow utilizing nanopore long-read sequencing and consensus generation for rapid identification of fungal taxa with high phylogenetic resolution
DOI 10.1101/2023.04.14.536971
Author
Y. Matsuo
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2023 · peak 2/yrCo-Author Collaboration Network
10 top collaborators · 29 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship8 papers
Recent·Most cited
- BiochemistryNature CommunicationsPeer-reviewed
Decoding of the ubiquitin code for clearance of colliding ribosomes by the RQT complex
Y. Matsuo, T. Inada, T. Uchihashi
The paper investigates how the RQT complex decodes ubiquitin signals to clear colliding ribosomes, showing that Cue3 and Rqt4 interact with K63-linked ubiquitin chains.
DOI 10.1038/s41467-022-35608-4 - BiochemistrybioRxivPreprint
Clearing of ribosome collisions by the ribosome quality control trigger complex RQT
K. M. Best, K. Ikeuchi, L. Kater…·R. Beckmann
The paper shows RQT clears collided ribosomes by pulling mRNA to trigger destabilizing conformational transitions for subunit dissociation.
DOI 10.1101/2022.04.19.488791 - MicrobiologybioRxiv
MinION™, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting
S. Komiya, Y. Matsuo, S. Nakagawa…·K. Hirota
The paper demonstrates that MinION sequencing enables rapid, high-resolution analysis of vaginal microbiota in a clinical setting, identifying species-level profiles associated with health and disease.
DOI 10.1186/s12920-022-01218-8 - MicrobiologybioRxiv
Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Y. Matsuo, S. Komiya, Y. Yasumizu…·K. Hirota
This study compares full-length and short-read 16S rRNA gene sequencing using MinION and conventional methods to assess species-level resolution in human gut microbiota.
DOI 10.1186/s12866-021-02094-5 - Cancer BiologybioRxiv
Cancerous phenotypes associated with hypoxia-inducible factors are not influenced by the volatile anesthetic isoflurane in renal cell carcinoma
C. Sumi, Y. Matsuo, M. Kusunoki…·K. Hirota
This study examines whether isoflurane affects cancer cell phenotypes linked to hypoxia-inducible factors in renal cell carcinoma, finding no positive influence of isoflurane on these traits.
DOI 10.1371/journal.pone.0215072 - MicrobiologybioRxiv
Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer
S. Kai, Y. Matsuo, S. Nakagawa…·K. Hirota
This study develops a rapid bacterial identification method using MinION sequencing and direct PCR of 16S rRNA genes, improving diagnostic speed and accuracy.
DOI 10.1002/2211-5463.12590 - Pharmacology & ToxicologybioRxiv
Propofol induces metabolic reprogramming and cell death in a mitochondrial electron transport chain-dependent manner
C. Sumi, A. Okamoto, H. Tanaka…·K. Hirota
This study shows propofol causes metabolic reprogramming and cell death by impairing mitochondrial function, specifically complexes I and III, and this effect is exacerbated by preexisting mitochondrial dysfunction.
DOI 10.1371/journal.pone.0192796