Author

Y. Shimada

University of Electro-Communications

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 1 Microbiology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1 Organism:rat· 1

Frequent Co-Authors

A. H. Meijer· 1 shared Aoba Yoshioka· 1 shared Daisuke NakaneiD· 1 shared H. Inoue· 1 shared H. Nonoguchi· 1 shared H. P. H. Spaink· 1 shared Hirofumi WadaiD· 1 shared Hiroyuki MorimuraiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperImmunology

A. H. Meijer

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Bacteria break through one-micrometer-square passages by flagellar wrapping

Aoba Yoshioka, Y. Shimada, Toshihiro Omori, Naoki A. Uemura, Kazutaka Takeshita, Kota Ishigami, Hiroyuki Morimura, Maiko Furubayashi, Tetsuo Kan, Hirofumi Wada, Yoshitomo Kikuchi, Daisuke Nakane

This study shows how bacteria use flagellar wrapping to move through narrow passages, with hook flexibility being essential for this movement.

Nature Communications · Jan 20, 2026Peer-reviewedMicrobiology

Erythropoietin production?by the kidney and the liver in response to severe hypoxia evaluated by Western blotting with deglycosylation

Y. Yasuoka, T. Fukuyama, Y. Izumi, Y. Nakayama, H. Inoue, K. Yanagita, T. Oshima, T. Yamazaki, T. Uematsu, N. Kobayashi, Y. Shimada, Y. Nagaba, M. Mukoyama, T. Yamashita, Y. Sato, , H. Nonoguchi

This study develops a Western blot method with deglycosylation to detect Epo and ESAs in urine and plasma, showing the kidney as the main site of Epo production under hypoxia.

bioRxiv · Mar 11, 2020Physiology

RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this Toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection

S. Yang, W. Hu, Y. Shimada, M. Munch, R. Marin-Juez, A. H. Meijer, H. P. H. Spaink

This study uses RNA-seq to analyze tlr2 mutant zebrafish and finds TLR2 plays a role in transcriptional control, metabolism, and defense against Mycobacterium marinum.

bioRxiv · Aug 22, 2019Immunology