Author

Yan Zhou Chen

Tufts University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:contrastive learning· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Assay:metagenomics· 1

Frequent Co-Authors

Soha HassouniD· 2 shared Blake R. RushingiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

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2 top collaborators · 1 mutual co-author link

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2 shared papersBioinformatics

Soha HassounORCID

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2 papers

Recent·Most cited

BioinformaticsAnalytical ChemistryPeer-reviewedFeb 23, 2026

Learning from All Views: A Multiview Contrastive Framework for Metabolite Annotation

Yan Zhou Chen, Soha Hassoun

This paper introduces MVP, a multiview contrastive framework for metabolite annotation that improves molecular candidate ranking using multiple data views.

5 citationstop 2%

metabolomicscontrastive learning

𝕏 PostBluesky

Systems BiologybioRxivPreprintJan 28, 2026

FLARE: Fine-grained Learning for Alignment of spectra-molecule REpresentation Enhances Metabolite Annotation

Yan Zhou Chen, Blake R. Rushing, Soha Hassoun

FLARE improves metabolite annotation by aligning spectra and molecular structures through contrastive learning, achieving state-of-the-art performance on MassSpecGym.

2 citations

metagenomicscontrastive learning

𝕏 PostBluesky