Author

Yi Pan

Shenzhen University of Advanced Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Biophysics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:human· 2 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Andrew B. KinghorniD· 1 shared Chad O. Brown· 1 shared Dong Wang· 1 shared Feipeng CheniD· 1 shared Haohui Ou· 1 shared Ho Cheung ShumiD· 1 shared Jaideep Singh BainsiD· 1 shared Jarryll A. UyiD· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBiophysics

Andrew B. KinghornORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

ERFMTDA: Predicting tsRNA-disease associations using an enhanced rotative factorization machine

Wei Lan, Dong Wang, Wenyi Chen, Xuhua Yan, Qingfeng Chen, Shirui Pan, Yi Pan

ERFMTDA predicts tsRNA-disease associations by modeling complex feature interactions and using a biologically informed negative sampling strategy, outperforming existing methods.

PLoS Computational Biology · Aug 18, 2026Peer-reviewedBioinformatics

The sodium channel SCN2A regulates cortical excitatory and inhibitory neurogenesis

Jarryll A. Uy, Zahra Dargaei, Sarah Geahchan, Laura Botler, Yi Pan, Chad O. Brown, Jennifer Howe, Stephen W. Scherer, Jaideep Singh Bains, Karun Kar Singh

This study shows that SCN2A loss in human forebrain organoids impairs excitatory and inhibitory neurogenesis, leading to developmental imbalances and reversible through Sonic hedgehog inhibition.

Nature Communications · Jul 27, 2026Peer-reviewedNeuroscience

Geometry-enhanced protein language modeling enables discovery of novel antibiotic resistance genes

Xingqiao Lin, Jiahui Guan, Yue Hong, Yilian Guo, Yutao Yang, Peilin Xie, Zhihao Zhao, Xingchen Liu, Yixian Huang, Yujing Ye, Yun Tang, Tzong-Yi Lee, Ying‐Chih Chiang, Li Wei, Xiangrong Liu, , Lantian Yao

GeoARG improves detection of distant antibiotic resistance genes using structural features and protein language models, uncovering 1,485 novel candidates.

bioRxiv · Apr 8, 2026 · PreprintBioinformatics

Pentose Sugars Encode Sequence-Dependent DNA-RNA Segregation for Programmable Engineering of Multiphase Condensates

Wei Peng Guo, Feipeng Chen, Andrew B. Kinghorn, Xiufeng Li, Haohui Ou, Yi Pan, Rong Luo, Yuchao Wang, Kwan Kiu Lau, Tianjiao Mao, Zhenyu Yang, Xiaolai Li, Ying Chen, Sihan Liu, Yage Zhang, , Ho Cheung Shum

The paper shows that a single sugar difference between DNA and RNA drives phase segregation with cationic peptides, enabling programmable synthetic condensates that mimic nuclear compartments.

bioRxiv · Jun 23, 2025 · PreprintBiophysics