Author

Yuanyuan Li

China Agricultural University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alison A. Motsinger‐ReifiD· 1 shared Cheng ZengiD· 1 shared chunjiang zhao· 1 shared David M. ReifiD· 1 shared Fengbiao MaoiD· 1 shared Hanwen ZhangiD· 1 shared Huanming YangiD· 1 shared jiahui wuiD· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBioinformatics

Alison A. Motsinger‐ReifORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 19, 2026

Tox21mer, A transformer foundation model for Tox21 high-throughput concentration-response curves data

Leping Li, Jisoo Hwang, Keith R. Shockley…·David M. Reif

Tox21mer is a transformer model trained on Tox21 concentration-response curves to predict compound activity and AC50, achieving high accuracy in outcome prediction and log10(AC50) estimation.

DOI 10.64898/2026.06.15.732308

bulk RNA-seqtransformer / foundation model

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 12, 2025

Telomere-to-telomere gap-free genome assembly of a male donkey and the identification of novel SVs associated with functional genes

Tao Yang, Ran yang, Yu Liu…·chunjiang zhao

The paper presents a gap-free donkey genome assembly and identifies novel structural variants in functional genes.

1 citation

non-human primatewhole-genome sequencing

𝕏 PostBluesky

Cell BiologybioRxivPreprintSep 28, 2017

Development of an Intrinsic Skin Sensor for Blood Glucose Level with CRISPR-mediated Genome Editing in Epidermal Stem Cells

Jiping Yue, Yuanyuan Li, Xuewen Gou, Xiaoyang Wu

The paper develops a CRISPR-mediated skin sensor for continuous blood glucose monitoring and diabetes treatment using genome-edited epidermal stem cells.

DOI 10.1101/195529

humangenetic perturbation / CRISPR

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Molecular BiologybioRxivPreprintAug 17, 2015

TET1 Modulates H4K16 Acetylation by Interacting with hMOF to Regulate Expression of DNA Repair Genes and Oncogenic Transformation

Jianing Zhong, Xianfeng Li, Wanshi Cai…·Zhong Sheng Sun

DOI 10.1101/024844

mouseChIP-seq

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