Author

Yue Fan

Janssen Research & Development (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:eQTL / molecular QTL mapping· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Shiquan SuniD· 2 shared Gregory C. Fanning· 1 shared Guang YangiD· 1 shared Guofeng MengiD· 1 shared Jenny TungiD· 1 shared Lei LiiD· 1 shared Qinke PengiD· 1 shared Tauras P. VilgalysiD· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

Shiquan SunORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedApr 15, 2024

Powerful and accurate detection of temporal gene expression patterns from multi-sample multi-stage single cell transcriptomics data with TDEseq

Yue Fan, Lei Li, Shiquan Sun

TDEseq detects temporal gene expression patterns in multi-sample, multi-stage single-cell transcriptomics data with improved power and calibration.

19 citations

scRNA-seqstatistical model

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedOct 24, 2019

IMAGE:High-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis

Yue Fan, Tauras P. Vilgalys, Shiquan Sun…·Xiang Zhou

The paper introduces IMAGE, a statistical method for mQTL mapping that improves detection of genetic effects on DNA methylation by accounting for bisulfite sequencing data and allele-specific patterns.

19 citations

DNA methylationstatistical model

𝕏 PostBluesky

BioinformaticsG3 Genes Genomes GeneticsPeer-reviewedMar 8, 2019

TSD: A computational tool to study the complex structural variants using PacBio targeted sequencing data

Guofeng Meng, Ying Ching Tan, Yue Fan…·Yang Qiu

TSD is a tool for discovering complex structural variants using PacBio targeted sequencing data, showing better performance than other tools in detecting complex genomic structural variants.

18 citations

humanlong-read sequencing

𝕏 PostBluesky