Author

Zhicheng Ji

Duke University School of Medicine

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Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:scATAC-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Beijie Ji· 1 shared

Activity by Year

2026-2026 · peak 1/yr

1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 3, 2026

VIGAT: VLM-guided gene activity quantification from single-cell ATAC-seq

Beijie Ji, Zhicheng Ji

VIGAT uses a vision-language model to quantify gene activity from single-cell ATAC-seq by analyzing accessibility patterns and genomic annotations across marker genes.

DOI 10.64898/2026.10.16.759698

scATAC-seqdeep learning

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