Author

Shen Jin

Technical University of MunichORCID 0000-0001-5159-1187Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:metagenomics· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Melanie SchirmeriD· 4 shared Aurélie CenieriD· 3 shared Daniela WetzeliD· 3 shared Emilio García RíosiD· 3 shared Marilena StamouliiD· 2 shared Merianne MohamadiD· 2 shared Svenja WeißenbergeriD· 2 shared Tingting ZhengiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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4 shared papersMicrobiology

Melanie SchirmerORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 12, 2026

MetaGEAR Explorer: rapid interactive searches and cross-cohort microbiome analyses to identify disease associations of microbial genes

Emilio García Ríos, Shen Jin, Chunyang Zhang…·Melanie Schirmer

MetaGEAR Explorer enables cross-cohort microbiome analyses to identify disease-associated microbial genes by expanding gene searches beyond sequence similarity.

DOI 10.64898/2026.03.30.715271

humanmetagenomics

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 26, 2026

Extensive genomic diversity in Desulfovibrio species reveals species-specific functional traits associated with disease

Tingting Zheng, Isabel Keidel, Hélène Omer…·Melanie Schirmer

The paper compiles 2,658 Desulfovibrio genomes from 90 diseases and 32 countries to identify species-specific functional traits linked to inflammatory diseases.

DOI 10.64898/2026.03.24.713149

bacteria (other)whole-genome sequencing

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MicrobiologybioRxivPreprintSep 29, 2025

Gene-centric metagenomic analyses reveal microbiome functional insights into diseases

Shen Jin, Aurélie Cenier, Lea Eisenhard…·Melanie Schirmer

The paper develops MetaGEAR, a gene-centric metagenomic analysis framework, to investigate microbiome functionality in diseases and identify disease signature genes and mobile genetic elements.

1 citation

humanmetagenomics

𝕏 PostBluesky

MicrobiologybioRxivPreprintSep 23, 2025

Microbial oral-gut translocation in advanced chronic liver disease is linked to exacerbation of intestinal barrier dysfunction and hepatic fibrosis

Shen Jin, Aurélie Cenier, Daniela Wetzel…·Melanie Schirmer

The paper identifies oral-gut microbial translocation in ACLD patients linked to intestinal barrier dysfunction and hepatic fibrosis, with prtC encoding bacteria as a biomarker.

2 citations

humanmetagenomics

𝕏 PostBluesky