Author

Gianmarco Contino

University of CambridgeORCID 0000-0001-5874-0405Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Paul A. EdwardsiD· 3 shared Rebecca Claire FitzgeraldiD· 3 shared Ahmad Miremadi· 2 shared Andrew David BeggsiD· 2 shared Andrew Davies· 2 shared Andrew HindmarshiD· 2 shared Anna M. GrabowskaiD· 2 shared Barbara Nutzinger· 2 shared

Activity by Year

2018-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Paul A. EdwardsORCID

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3 papers

Recent·Most cited

Cancer BiologyNature CancerPeer-reviewedJan 3, 2025

Context-dependent effects of CDKN2A and other 9p21 gene losses during the evolution of oesophageal cancer

Piyali Ganguli, Celia De Los Angeles Colomina Basanta, Amelia Acha‐Sagredo…·Jo Spencer

The paper investigates how CDKN2A and other 9p21 gene losses influence oesophageal cancer progression, finding context-dependent effects on survival and immune infiltration.

28 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 7, 2018

Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours

Bernardo Rodríguez–Martín, Eva G. Álvarez, Adrian Baez‐Ortega…·the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network

The paper analyzes somatic retrotransposition events in 2,954 cancer genomes, identifying L1 insertions as significant contributors to structural variations and oncogenesis.

17 citations

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 19, 2018

Low-cost and clinically applicable copy number profiling using repeat DNA

Sam Abujudeh, Sebastian S. Zeki, MCV van Lanschot…·Richard Calvin Turkington

The paper introduces conliga, a method for inferring high-resolution SCNA profiles from a low-cost and simple assay, addressing the need for affordable SCNA analysis in clinical settings.

2 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky