Author

Katherine Silliman

National Oceanic and Atmospheric AdministrationORCID 0000-0001-5964-3965Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:metagenomics· 2 Organism:non-human primate· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Laura H. SpenceriD· 2 shared Steven RobertsiD· 2 shared Astrid SchnetzeriD· 1 shared Beth A. StaufferiD· 1 shared Christopher R. KelbleiD· 1 shared Emily CurdiD· 1 shared Fabian A. GomeziD· 1 shared Leticia BarberoiD· 1 shared

Activity by Year

2023-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersPhysiology

Laura H. SpencerORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 30, 2024

Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding

Sean R. Anderson, Katherine Silliman, Leticia Barbero…·Luke R. Thompson

DOI 10.1101/2024.07.30.605667

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsEnvironmental DNAPeer-reviewedNov 29, 2023

rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R

Emily Curd, Luna Gal, Ramón Gallego…·Zachary J. Gold

rCRUX generates comprehensive metabarcoding reference libraries for user-defined loci, outperforming existing tools in creating diverse and accurate databases.

15 citations

metagenomicsstatistical model

𝕏 PostBluesky

PhysiologybioRxivPreprintSep 8, 2023

Population-specific effects of ocean acidification in the Olympia oyster

Laura H Spencer, Katherine Silliman, Steven Roberts

This study examines how three Olympia oyster populations respond differently to ocean acidification, identifying distinct physiological and transcriptional strategies that affect survival and reproduction.

DOI 10.1101/2023.09.08.556443

non-human primatebulk RNA-seq

𝕏 PostBluesky

GenomicsGenome Biology and EvolutionPeer-reviewedFeb 1, 2023

Epigenetic and genetic population structure is coupled in a marine invertebrate

Katherine Silliman, Laura H. Spencer, Samuel J. White, Steven Roberts

This study examines the coupling between genetic and epigenetic variation in Olympia oysters, finding that 27% of methylation differences are explained by genotype.

29 citations

non-human primateDNA methylation

𝕏 PostBluesky