Author

Pornpat Athamanolap

Johns Hopkins UniversityORCID 0000-0001-6124-4955Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:DNA methylation· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Akosua Osei-Tutu· 1 shared Alexander GoncearencoiD· 1 shared Brendan MilleriD· 1 shared Christina M. AnnunziataiD· 1 shared Christine M. O'Keefe· 1 shared Gennady Margolin· 1 shared Hanna M. Petrykowska· 1 shared Jeff (Tza-Huei) Wang· 1 shared

Activity by Year

2019-2020 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Akosua Osei-Tutu

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2 papers

Recent·Most cited

BioinformaticsClinical EpigeneticsPeer-reviewedOct 20, 2020

Improving the clinical performance of blood-based DNA methylation biomarkers utilizing locus-specific epigenetic heterogeneity

Brendan Miller, Thomas R. Pisanic, Gennady Margolin…·Laura L. Elnitski

This paper develops EpiClass, a methylation density-based classifier that improves the performance of blood-based DNA methylation biomarkers in detecting ovarian cancer by leveraging locus-specific epigenetic heterogeneity.

19 citations

humanDNA methylation

𝕏 PostBluesky

BioengineeringbioRxivPreprintMar 24, 2019

Machine Learning-Assisted Digital PCR and Melt Enables Broad Bacteria Identification and Pheno-Molecular Antimicrobial Susceptibility Test

Pornpat Athamanolap, Kuangwen Hsieh, Christine M. O'Keefe…·Jeff (Tza-Huei) Wang

This paper develops a microfluidic and machine learning platform for rapid bacteria identification and antimicrobial susceptibility testing using digital PCR and melt analysis.

DOI 10.1101/587543

bacteria (other)DNA methylation

𝕏 PostBluesky