Ruolin Yang

RiboBA improves ncORF identification by accounting for protocol-induced biases in ribosome profiling data.

This study shows FERONIA affects translational buffering of ribosome-associated genes in tomato roots under salt stress, altering translational efficiency and gene expression patterns.

This study constructs a single-cell transcriptomic atlas of tomato adventitious root development, identifying vascular tissues as key regulators of cell fate transitions and revealing conserved molecular mechanisms across species.

This paper introduces scSimGCL, a graph contrastive learning framework for scRNA-seq data that improves cell clustering through self-supervised pretraining and high-quality representation learning.

This study shows that retrocopies and their parental genes colocalize in 3D genome organization, leading to increased transcription, translation, and evolutionary conservation.