Author

Lynn Ly

Oxford Nanopore Technologies (United Kingdom)ORCID 0000-0001-6321-8996Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 3 Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Organism:C. elegans· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

J. A. BeaulaurieriD· 3 shared Jacob A. West-RobertsiD· 3 shared Jillian F. BanfieldiD· 3 shared Rohan SachdevaiD· 3 shared Luis E. Valentin-AlvaradoiD· 2 shared Marie Charlotte SchoelmerichiD· 2 shared Scott Hickey· 2 shared Sissel JuuliD· 2 shared

Activity by Year

2023-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersMicrobiology

J. A. BeaulaurierORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

MicrobiologyNature CommunicationsPeer-reviewedJul 31, 2024

Asgard archaea modulate potential methanogenesis substrates in wetland soil

Luis E. Valentin-Alvarado, Kathryn E. Appler, Valerie De Anda…·Jillian F. Banfield

The paper reconstructs genomes of soil-associated Asgard archaea and uses metatranscriptomics to show their role in carbon compound metabolism relevant to methane production in wetlands.

38 citationstop 1%

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologyNature CommunicationsPeer-reviewedJun 26, 2024

Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires

Marie Charlotte Schoelmerich, Lynn Ly, Jacob A. West-Roberts…·Jillian F. Banfield

The paper identifies conserved genetic repertoires in Borg extrachromosomal elements of methane-oxidizing archaea and shows their higher expression than host genes.

19 citations

C. eleganslong-read sequencing

𝕏 PostBluesky

ImmunologybioRxivPreprintMar 26, 2024

De novo antibody discovery in human blood from full-length single B cell transcriptomics and matching haplotyped-resolved germline assemblies

John Beaulaurier, Lynn Ly, J. Andrew Duty…·Benhur Lee

This study uses single-cell transcriptomics and germline haplotype assembly to discover antibodies from human blood post-MMR vaccination, showing neutralization of measles virus.

3 citations

humanscRNA-seq

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BioinformaticsbioRxivPreprintFeb 29, 2024

CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysis

Sara E. Simmonds, Lynn Ly, John Beaulaurier…·Katrina Kalantar

CZ ID introduces a long-read metagenomic analysis pipeline, benchmarked against Kraken2, for virus detection and antimicrobial resistance gene identification.

29 citations

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintNov 21, 2023

Giant genes are rare but implicated in cell wall degradation by predatory bacteria

Jacob A. West-Roberts, Luis E. Valentin-Alvarado, Susan Mullen…·Jillian F. Banfield

The paper identifies giant genes in predatory bacteria, showing they are associated with prey adhesion and cell wall degradation.

16 citations

bacteria (other)proteomics

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