Nitesh Kumar Sharma

This study analyzes code sharing practices in biomedical research and finds that less than half of manuscripts share analytical code, with significant associations between code availability statements and actual code sharing.

DeepPlnc is a deep learning system for plant lncRNA discovery that outperforms existing tools with high accuracy and robustness to sequence ambiguity.

RBPSpot identifies RBP binding sites using contextual sequence features and a DNN, achieving ~90% accuracy and outperforming existing tools across multiple datasets.

miRbiom uses Bayesian causal networks of RBP-miRNA interactions to predict miRNA profiles with high accuracy without requiring separate miRNA profiling experiments.