Habib Bashour

PEPE efficiently extracts multimodal protein embeddings from language models, enabling scalable and memory-efficient generation of large embedding datasets for downstream biological tasks.

The paper quantitatively maps antigen specificity in immune repertoire embedding spaces, showing distinct regions for different antigen-specific sequences.

The paper quantifies the plasticity of antibody developability by analyzing sequence and structure-based parameters in natural and human-engineered antibodies.

The paper identifies a new subset of tonsillar memory B cells that serve as precursors for IgD-secreting plasma cells, contributing to steady-state IgD responses to common antigens.