Author

Anna A. Karpukhina

Centre National de la Recherche ScientifiqueORCID 0000-0001-6830-149XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:chromatin & epigenetic regulation· 1 Assay:CITE-seq· 1

Frequent Co-Authors

Yegor S VassetzkyiD· 2 shared Adeline DurandiD· 1 shared Alexandra Van KeymeuleniD· 1 shared Amélie Viaene· 1 shared Azat K GaraeviD· 1 shared Cédric BlanpainiD· 1 shared Céline VallotiD· 1 shared Daria Bogdanova· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersCancer Biology

Yegor S VassetzkyORCID

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3 papers

Recent·Most cited

Cancer BiologyCancer LettersPeer-reviewedJul 17, 2026

RNAseq analysis reveals the recurrent loss of heterozygosity in lung cancer and associated transcription patterns

Ruslan Gumerov, Wangzhen He, Phong Luong…·Anna A. Karpukhina

This study uses RNA-seq to infer chromosomal aberrations in lung cancer and identifies shared and deletion-specific transcriptional patterns and biomarkers.

DOI 10.1016/j.canlet.2026.218741

humanbulk RNA-seq

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Cancer BiologybioRxivPreprintJun 9, 2026

Translocation-driven chr19-der(14) interaction is associated with disease-specific transcriptional programs in mantle cell lymphoma

Anna A. Karpukhina, Yelena Grishina, Ivan Tsimailo…·Yegor S Vassetzky

This study identifies interchromosomal interactions between chr19 and the CCND1 locus in MCL, linking spatial genome reorganization to disease-specific transcriptional programs.

DOI 10.64898/2026.06.05.730311

humanbulk RNA-seq

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GenomicsbioRxivPreprintFeb 17, 2026

Matched single-cell chromatin, transcriptome, and surface marker profiling captures in vivo epigenomic reprogramming during basal-to-luminal transition in the mammary gland

Anna A. Karpukhina, Eve Moutaux, Adeline Durand…·Céline Vallot

The paper introduces OneCell CUT&Tag, a single-cell multi-omics method that captures chromatin, transcriptome, and surface marker data, revealing epigenomic reprogramming during mammary gland basal-to-luminal transition.

DOI 10.64898/2026.02.16.706078

mousescATAC-seq

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