Yadong Liu

The paper introduces cuteSV2, a long-read-based method for accurate structural variant regenotyping, outperforming existing methods in benchmarking.

GFHunter detects gene fusions in long-read cancer transcriptomes with high accuracy, reduced false positives, and improved speed and memory efficiency.

gcSV is a structural variant detection framework that improves accuracy and yield across long, hybrid, and short-read data, identifying over 93,000 novel SVs.

deSALT improves long RNA-seq read alignment by addressing sequencing errors and gene structure complexity through a two-pass graph-based approach.