Ludwig Mann

The paper identifies chromosomal and genetic variability in saffron crocus cultivars, revealing regional somaclonal lineages despite clonal origin.

TEtrimmer automates TE curation by integrating alignment and classification methods, improving intact TE identification across six organisms.

The paper develops a method to generate high-fidelity repeat consensus sequences from short reads by combining read clustering and genome assembly, showing robust results across multiple use cases.

This study shows Cassandra retrotransposons gradually co-evolve with 5S rRNA gene promoter mutations in the Asteraceae family, adapting to host transcription factors.

ECCsplorer detects extrachromosomal circular DNA from next-generation sequencing data using a bioinformatics pipeline, identifying eccDNA candidates across various organisms and datasets.