Author

Alexander Yu. Komkov

Institute of Bioorganic ChemistryORCID 0000-0001-9113-698XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Dmitriy M. ChudakoviD· 2 shared Ilgar Z. MamedoviD· 2 shared Olga V. BritanovaiD· 2 shared Pavel V. ShelyakiniD· 2 shared Alexandra I. NekrasovaiD· 1 shared Anastasia A. MinervinaiD· 1 shared Anastasia Pivnyuk· 1 shared André FrankeiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersImmunology

Dmitriy M. ChudakovORCID

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3 papers

Recent·Most cited

ImmunologyGenome MedicinePeer-reviewedFeb 12, 2026

Robust detection of SARS-CoV-2 exposure in population using T-cell repertoire profiling

Elizaveta K. Vlasova, Alexandra I. Nekrasova, Alexander Yu. Komkov…·Mikhail Shugay

The paper develops a classifier for detecting SARS-CoV-2 exposure using T-cell repertoire profiling and machine learning, achieving high accuracy across different protocols.

9 citationstop 1%

humanscRNA-seq

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ImmunologyFrontiers in ImmunologyPeer-reviewedApr 4, 2025

Repertoire-based mapping and time-tracking of helper T cell subsets in scRNA-Seq

Daniil K. Lukyanov, Valeriia Kriukova, Kristin Ladell…·Dmitriy M. Chudakov

This paper introduces TCR-Track, a method to map and track helper T cell subsets in scRNA-Seq data, revealing their clonal relationships and functional programs over time.

9 citations

humanscRNA-seq

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GenomicsbioRxivPreprintMar 29, 2018

Genomic normalization for sequencing libraries enrichment for rare somatic retroelement insertions

Alexander Yu. Komkov, Gaiaz A. Nugmanov, Maria Salutina…·Ilgar Z. Mamedov

This study develops a normalization procedure to enhance detection of rare somatic retroelement insertions in sequencing libraries, increasing identified insertions by 7.9-fold.

DOI 10.1101/291773

humanwhole-genome sequencing

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