Author

Xiaochuan Liu

BGI Group (China)ORCID 0000-0001-9151-1997Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chengcheng ShiiD· 1 shared Guangyi FaniD· 1 shared Jadwiga Renata Bienkowska· 1 shared Jianwei CheniD· 1 shared Lidong GuoiD· 1 shared Mengyang XuiD· 1 shared Wenyan ZhongiD· 1 shared Xin LiuiD· 1 shared

Activity by Year

2020-2020 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

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1 shared paperBioinformatics

Chengcheng ShiORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 26, 2020

Symbiont-Screener: a reference-free filter to automatically separate host sequences and contaminants for long reads or co-barcoded reads by unsupervised clustering

Mengyang Xu, Lidong Guo, Chengcheng Shi…·Guangyi Fan

Symbiont-Screener separates host sequences from contaminants in long reads or co-barcoded reads using unsupervised clustering without reference alignment, achieving high accuracy in simulated and real data.

DOI 10.1101/2020.10.26.354621

humanlong-read sequencing

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BioinformaticsPLoS ONEPeer-reviewedAug 31, 2020

GeneTEFlow: A Nextflow-based pipeline for analysing gene and transposable elements expression from RNA-Seq data

Xiaochuan Liu, Jadwiga Renata Bienkowska, Wenyan Zhong

GeneTEFlow provides a Nextflow-based pipeline for analyzing gene and transposable element expression from RNA-Seq data, improving ease of use and integration.

9 citations

humanbulk RNA-seq

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