Author

Sarah K. Baxter

Seattle Children's HospitalORCID 0000-0001-9341-2634Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:proteomics· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Patrick J. DanaheriD· 2 shared Shaun W. JacksoniD· 2 shared Allison R. O’Rourke· 1 shared Carmen R. MikaceniciD· 1 shared Cate SpeakeiD· 1 shared Charles E. AlpersiD· 1 shared Christian RickertiD· 1 shared Daryl M. OkamuraiD· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersImmunology

Patrick J. DanaherORCID

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3 papers

Recent·Most cited

ImmunologyScience Translational MedicinePeer-reviewedNov 27, 2024

Single cell spatial transcriptomic profiling of childhood-onset lupus nephritis reveals complex interactions between kidney stroma and infiltrating immune cells.

Patrick J. Danaher, Nicholas Hasle, Elizabeth Dong Nguyen…·Shaun W. Jackson

This study uses single cell spatial transcriptomics to analyze kidney tissue from childhood-onset lupus nephritis patients, revealing spatial interactions between immune cells and kidney stroma.

58 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky

ImmunologybioRxivPreprintAug 13, 2024

Identification of biomarkers for COVID-19 associated secondary hemophagocytic lymphohistiocytosis

Susan Canny, Ian B. Stanaway, Sarah E. Holton…·Jessica A. Hamerman

The paper identifies biomarkers and genetic variants associated with COVID-19 linked secondary hemophagocytic lymphohistiocytosis (sHLH) and links them to immune system defects.

4 citations

humanproteomics

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BioinformaticsbioRxivPreprintOct 19, 2022

Insitutype: likelihood-based cell typing for single cell spatial transcriptomics

Patrick J. Danaher, Edward J. Zhao, Zhi Gang Yang…·Joseph Beechem

Insitutype types cells in spatial transcriptomics with a likelihood model over every expression value, admits image and neighbourhood priors, and is reported to cluster millions of cells quickly.

66 citations

humanspatial transcriptomics

𝕏 PostBluesky