Eda Koculi

The paper uses direct RNA sequencing to analyze rRNA modifications in E. coli ribosome assembly intermediates and mature subunits, showing stress-dependent reprogramming of specific modifications.

This study optimized a colorimetric assay to identify inhibitors of ZIKV RdRp, finding two compounds with inhibitory activity.

This study uses proteomics to compare antibiotic resistance mechanisms in exponential and stationary phases of an E. coli strain, revealing phase-specific resistance pathways.

The paper develops a method to detect RNA post-transcriptional modifications in E. coli ribosomal RNA without chemical treatment, identifying modification incorporation times in ribosome assembly intermediates.

This study identifies the nucleotide substrates and RNA structures that stimulate DDX1 ATPase activity, showing DDX1 hydrolyzes only ATP and deoxy-ATP in the presence of RNA.