Author

Angela Violi

University of MichiganORCID 0000-0001-9517-668XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Approach:graph neural network· 1 Approach:machine learning (classical)· 1 Research Focus:protein design· 1 Approach:statistical model· 1

Frequent Co-Authors

Paolo ElvatiiD· 3 shared Jacob C. SaldingeriD· 2 shared Abram MagneriD· 1 shared Alfred O. HeroiD· 1 shared Allen LiuiD· 1 shared Changjiang Liu· 1 shared Emine Sumeyra Turali EmreiD· 1 shared J. Scott VanEppsiD· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBioinformatics

Paolo ElvatiORCID

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Author profile →

3 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedSep 10, 2022

Struct2Graph: A graph attention network for structure based predictions of protein-protein interactions

Mayank Baranwal, Abram Magner, Jacob C. Saldinger…·Alfred O. Hero

Struct2Graph predicts protein-protein interactions using 3D structural data with high accuracy and identifies key residues involved in interactions.

80 citationstop 2%

protein structuregraph neural network

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 9, 2022

From proteins to nanoparticles: domain-agnostic predictions of nanoscale interactions.

Jacob C. Saldinger, Matt Raymond, Paolo Elvati, Angela Violi

This paper introduces NeCLAS, a machine learning pipeline that predicts nanoscale interactions across domains, outperforming existing models and showing cross-domain validity.

DOI 10.1101/2022.08.09.503361

protein structuremachine learning (classical)

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BiophysicsbioRxivPreprintApr 30, 2019

Predicting the time of entry of nanoparticles in cellular membranes

Changjiang Liu, Paolo Elvati, Sagardip Majumder…·Angela Violi

The paper introduces a theoretical model to predict nanoparticle membrane permeation time by separating nanoparticle and membrane properties, validated with experimental and simulation data.

DOI 10.1101/619221

statistical model

𝕏 PostBluesky