Author

Konstantin Berlin

ORCID 0000-0001-9682-604XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:genome assembly· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Approach:deep learning· 1

Frequent Co-Authors

Sergey KoreniD· 2 shared Adam M Phillippy· 1 shared Adam M. PhillippyiD· 1 shared Brian P. WalenziD· 1 shared Chen-Shan ChiniD· 1 shared James Drake· 1 shared Jane M Landolin· 1 shared Jason Rafe MilleriD· 1 shared

Activity by Year

2015-2017 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Sergey KorenORCID

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2 papers

Recent·Most cited

BioinformaticsGenome ResearchPeer-reviewedMay 1, 2017

✦ In-depth digest

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren, Brian P. Walenz, Konstantin Berlin…·Adam M. Phillippy

Canu's tf-idf weighted MinHash overlapping and error-filtered sparse overlap graph yield complete Nanopore microbial genomes and contig NG50 above 21 Mbp for PacBio human and Drosophila.

7,329 citations

multiple specieshuman

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BioinformaticsNature BiotechnologyPeer-reviewedMay 25, 2015

Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

Konstantin Berlin, Sergey Koren, Chen-Shan Chin…·Adam M Phillippy

The paper introduces MHAP, a method using locality-sensitive hashing to improve genome assembly from single-molecule sequencing, achieving high-quality assemblies for multiple organisms.

DOI 10.1038/nbt.3238

E. coliyeast

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