Author

Emily K.W. Lo

Johns Hopkins UniversityORCID 0000-0002-0449-8083Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Patrick CahaniD· 3 shared Adrian IdriziiD· 1 shared Andrew P. FeinbergiD· 1 shared Chulan KwoniD· 1 shared Da PengiD· 1 shared Hongkai JiiD· 1 shared Jeremy J. VelazqueziD· 1 shared Mo R. EbrahimkhaniiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersCancer Biology

Patrick CahanORCID

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3 papers

Recent·Most cited

Cancer BiologyGenome MedicinePeer-reviewedMar 28, 2025

DNA methylation memory of pancreatic acinar-ductal metaplasia transition state altering Kras-downstream PI3K and Rho GTPase signaling in the absence of Kras mutation

Emily K.W. Lo, Adrian Idrizi, Rakel Tryggvadóttir…·Andrew P. Feinberg

The paper investigates DNA methylation changes during pancreatic acinar-ductal metaplasia (ADM) and their persistence without Kras mutation, linking epigenetic memory to signaling pathway alterations and cancer cell plasticity.

7 citations

humanDNA methylation

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Developmental BiologybioRxivPreprintSep 7, 2022

Platform-Agnostic CellNet (PACNet) enables cross-study meta-analysis of cell fate engineering protocols

Emily K.W. Lo, Jeremy J. Velazquez, Da Peng…·Patrick Cahan

PACNet enables platform-agnostic comparison of cell fate engineering protocols by analyzing transcriptomic data from multiple studies and identifying best practices and off-target effects.

3 citations

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintApr 20, 2019

Radiator: a cloud-based framework for deploying reusable bioinformatics tools

Emily K.W. Lo, Remy M Schwab, Zak Burke, Patrick Cahan

The paper introduces Radiator, a cloud-based framework for deploying bioinformatics tools as web applications, and describes its implementation and availability.

1 citation

experimental assaysoftware / tool

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