Author

Gon Carmi

Agricultural Research OrganizationORCID 0000-0002-1031-2935Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:large language model· 1 Organism:plant (other)· 1

Frequent Co-Authors

Adi Faigenboim‐DoroniD· 1 shared Alon Avraham GinattiD· 1 shared Amir EreziD· 1 shared Dmitry Alekhin· 1 shared Einam Castel· 1 shared Hanan EizenbergiD· 1 shared Itai SharoniD· 1 shared Maria BerihuiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Adi Faigenboim‐DoronORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 7, 2025

Fast and accurate taxonomic domain assignment of short metagenomic reads using BBERT

Dmitry Alekhin, Moshe Alon, Tomer Sidi…·Amir Erez

BBERT is a nucleotide large language model that accurately assigns taxonomic domains to short metagenomic reads without reference databases, improving assembly and downstream analysis.

1 citation

metagenomicslarge language model

𝕏 PostBluesky

MicrobiologybioRxivDec 11, 2023

A metabolic modeling-based framework for predicting trophic dependencies in native rhizobiomes of crop plants

Alon Avraham Ginatt, Maria Berihu, Einam Castel…·Shiri Freilich

This paper presents a metabolic modeling framework to predict trophic dependencies in rhizobiomes, identifying beneficial and non-beneficial microbial interactions in apple root environments.

5 citations

plant (other)metagenomics

𝕏 PostBluesky