Author
Centers for Disease Control and PreventionORCID 0000-0002-1190-7930Unclaimed ORCID profile · follow to get notified of new preprints
3 papers
Recent·Most cited
Arancha Peñil-Celis, Santiago Redondo-Salvo, Kaitlin A. Tagg…·Fernando de la Cruz
JINA is a workflow that integrates existing tools to analyze bacterial genomes via a network approach, enabling visualization and identification of genomic patterns and associations.
Arancha Peñil-Celis, Kaitlin A. Tagg, Hattie E. Webb…·Fernando de la Cruz
The paper introduces a method to measure pangenome relatedness using Jaccard Index and a novel distance metric to capture both vertical and horizontal gene transfer in Salmonella Typhi, enhancing genomic surveillance.
Santiago Redondo, Roger Bartomeus-Peñalver, Luis Vielva…·Fernando de la Cruz
COPLA assigns plasmids to existing PTUs and identifies potential new PTUs, with 41% of samples assigned and 4% suggesting new classifications.