Author

Liliane Santana Oliveira

Universidade Tecnológica Federal do ParanáORCID 0000-0002-1538-8541Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Alexandre Rossi PaschoaliD· 2 shared Alisson Gaspar ChiquittoiD· 2 shared Douglas Silva DominguesiD· 1 shared Francismar Corrêa Marcelino‐GuimarãesiD· 1 shared Lucas Otávio L. SilvaiD· 1 shared Mark BashamiD· 1 shared Pedro H. BugattiiD· 1 shared Priscila T. M. SaitoiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Alexandre Rossi PaschoalORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintJul 9, 2026

COMPARATIVE GENOMIC ANALYSIS OF CORE AND ACCESSORY GENES IN RUST FUNGI REVEALS PATHOGENICITY-ASSOCIATED GENE FAMILIES IN Phakopsora pachyrhizi

Vinícius Delgado da Rocha, Liliane Santana Oliveira, Francismar Corrêa Marcelino‐Guimarães

DOI 10.64898/2026.07.03.736376

fungi (other)whole-genome sequencing

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BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedMar 29, 2025

Generative Approaches for Nucleotide Sequences to Enhance Non-coding RNA Classification

Alisson Gaspar Chiquitto, Liliane Santana Oliveira, Pedro H. Bugatti…·Alexandre Rossi Paschoal

This study introduces GENNUS, a generative approach using GANs and SMOTE to improve ncRNA classification by addressing class imbalance through synthetic data generation.

4 citations

DNA methylationwhole-genome sequencing

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BioinformaticsIEEE International Conference on Bioinformatics and Biomedicine (BIBM)Peer-reviewedDec 6, 2022

Impact of sequencing technologies on long non-coding RNA computational identification

Alisson Gaspar Chiquitto, Lucas Otávio L. Silva, Liliane Santana Oliveira…·Alexandre Rossi Paschoal

This study evaluates the performance of lncRNA prediction tools on long-read sequencing data and identifies challenges in their application.

5 citationstop 4%

long-read sequencingbenchmark study

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