Kingshuk Mukherjee

ONeSAMP 3.0 estimates genetic effective population size (Ne) from SNP data of a single population using Approximate Bayesian Computation and local linear regression, showing robustness and accuracy in simulated and empirical data.

The paper introduces a Gaussian mixture model clustering method to find overlapping Rmaps without quantization, improving precision and efficiency in optical mapping analysis.

The paper introduces cOMet, an error correction method for optical mapping data, which improves the accuracy of Rmap data and enhances genome assembly quality.