Author

Sunyoung Kim

University of ReginaORCID 0000-0002-1736-9088Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:E. coli· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Mohan BabuiD· 2 shared Ádám GyörkeiiD· 1 shared Ali Hosseinnia· 1 shared Alla Gagarinova· 1 shared Ana Martins· 1 shared Anikó Faragó· 1 shared Balázs PappiD· 1 shared Bálint CsörgőiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

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10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Mohan BabuORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedMay 7, 2025

Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli

Patrick Lally, Laura Gómez-Romero, Víctor H. Tierrafría…·James E. Galagan

The paper maps DNA binding of 139 E. coli TFs using ChIP-Seq and trains BoltzNet, a neural network that predicts TF binding energy from DNA sequence, validated with biophysical experiments.

13 citations

E. coliChIP-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintFeb 8, 2019

Chemical-genetic profiling reveals cross-resistance and collateral sensitivity between antimicrobial peptides

Bálint Kintses, Pramod K. Jangir, Gergely Fekete…·Balázs Papp

This study uses a chemical-genetic approach to analyze resistance determinants of E. coli to 15 AMPs, revealing cross-resistance and collateral sensitivity patterns.

DOI 10.1101/542548

E. coliexperimental assay

𝕏 PostBluesky