Author

Johannes Seiffarth

Forschungszentrum JülichORCID 0000-0002-2087-9847Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Assay:imaging· 3 Research Focus:software / tool· 3 Organism:bacteria (other)· 2 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:cell-cell communication· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Dietrich KohlheyeriD· 3 shared Katharina NöhiD· 3 shared Bastian WollenhauptiD· 2 shared Hanno ScharriD· 2 shared Oliver NeumanniD· 2 shared Ralf MikutiD· 2 shared Tim ScherriD· 2 shared A. KrügeriD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersBioinformatics

Dietrich KohlheyerORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

MicrobiologyProceedings of the National Academy of SciencesPeer-reviewedJun 3, 2026

DNA-intercalating antiphage molecules trigger abortive infection through mutual destruction and synergize with bacterial immunity

Larissa N. Ernst, Cornelia Gätgens, Bente Rackow…·Julia Frunzke

3 citationstop 1%

bacteria (other)experimental assay

𝕏 PostBluesky

BioinformaticsSoftwareXPeer-reviewedFeb 1, 2024

ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud

Johannes Seiffarth, Tim Scherr, Bastian Wollenhaupt…·Katharina Nöh

ObiWan-Microbi provides a cloud-based platform for semi-automated image annotation in microfluidic live-cell imaging using deep learning segmentation.

11 citations

imagingdeep learning

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BioinformaticsPLoS ONEPeer-reviewedNov 29, 2022

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt…·Ralf Mikut

microbeSEG provides a deep learning tool for automated cell segmentation in microbial cultures, achieving accurate results within 45 minutes of user time.

12 citations

imagingdeep learning

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BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2022

CellSium - Versatile Cell Simulator for Microcolony Ground Truth Generation

Christian Carsten Sachs, Karina Ruzaeva, Johannes Seiffarth…·Katharina Nöh

CellSium generates synthetic microcolony images for training deep learning segmentation models in microfluidic live-cell imaging.

4 citations

bacteria (other)imaging

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